YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45441413, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSVTLGKAL ITKEDRDGDE KKMAVKRKNI IIVALGLLLS HHILAQQTLA AHQALETDLS  60
   61 VQVNQFFQQQ YSDKESQVKV VIKTPQNQWP QCDAPEITLP ANARPWGNIS LSVRCDGLRR 120
  121 FIQTQVQVSG RYAVAVRRLA AGEKISAQDI QMKQGRLDTL PPGALLDAHF AQGAVSQRQI 180
  181 NAGQPLTRNM LRRLWLVKAG QDVPVLAQGD GFNVNSNGKA MNNGAAQETI RVRMPSGQIV 240
  241 SGTVADDGTI RIML

Type	Start	End	Confidence
Cytoplasmic	1	29	0.60
Transmembrane Helix	30	45	0.61
Non-Cytoplasmic	46	254	0.99