YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22126131, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIRHRSYYG EKGLLLTLCH CQRVPARSIF SLNRHRFLLY MKSVKPMGGS RYMNTLENIQ  60
   61 NSMDLLSKSE RKVAEVILAS PQTAIHSSIA TLAKMANVSE PTVNRFCRRL ETKGFPDFKL 120
  121 HLAQSLANGT PYVNRNVEED DSVAAYTGKI FESTMASLDR VKNNLDIAAI NRAVDLLTQA 180
  181 KKISFFGLGS SAAVAHDAMN KFFRFNIPVI YFDDIVMQRM SCMNSSEGDV VVLISHTGRT 240
  241 KSLVELAQLA RENDAAVIAI TSCDTPLANE ATLSLLLDVP EDTDMYMPMV SRIAQLTLID 300
  301 VLATGFTLRR GAKFRDNLKR VKEALKESRF DKDSLPVNNG D

Type	Start	End	Confidence
Signal Peptide	1	26	0.57
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	341	0.99