YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21959020, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYTAGTIAY CMENKDMLQF LNRCSRGRGA WLLMALTAFL LELTALYFQH IMLLQPCVMC  60
   61 IYERVALFGI LGASLLGAIA PRSPLRYLAI AVWIYSAWKG VQLAWAHTML QLNPSPFNTC 120
  121 DFFVNFPSWL PLDKWLPAVF AASGDCSERQ WQFMSLEMPQ WLVGIFAAYL VIAVLVLISQ 180
  181 FVKPKRRDLF GR

Type	Start	End	Confidence
Cytoplasmic	1	28	0.97
Transmembrane Helix	29	51	0.90
Non-Cytoplasmic	52	59	0.81
Transmembrane Helix	60	80	0.91
Cytoplasmic	81	86	0.83
Transmembrane Helix	87	108	0.85
Non-Cytoplasmic	109	160	0.95
Transmembrane Helix	161	182	0.94
Cytoplasmic	183	192	0.96