YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21957067, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQTYICCSH ASITIVVFIA TVVFLGIYPP CSYGYYTDSV HRSVIGWAVK YKTVTSMLDK  60
   61 IIRIATRQSP LALWQAHYVQ HLLQANHPGL QIELVPMVTR GDIILDTPLA KVGGKGLFVK 120
  121 ELELALLDGR ADIAVHSMKD VPIAFPEGLG LVTICEREDP RDAFVSSHYA HLDDLPAGSV 180
  181 VGTSSLRRQC QLRERRPDLI IRDLRGNVGT RLAKLDNGDY QAIILAVAGL KRLGLENRIR 240
  241 YAMSAEESLP AVGQGAVGIE CRLDDDHTRQ LLAPLNHRHT ELRVCAERAM NIRLEGGCQV 300
  301 PIGSYAELEG DTLWLRALVG APDGSQMIRG ERRGPAAEAE QMGIELADEL LSRGAREILA 360
  361 AVYLDNPAR

Type	Start	End	Confidence
Cytoplasmic	1	7	0.69
Transmembrane Helix	8	28	0.72
Non-Cytoplasmic	29	369	0.92