YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|45599722, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.98
Transmembrane Helix	42	65	0.80
Non-Cytoplasmic	66	73	0.85
Transmembrane Helix	74	93	0.97
Cytoplasmic	94	113	0.86
Transmembrane Helix	114	134	0.95
Non-Cytoplasmic	135	153	0.93
Transmembrane Helix	154	175	0.91
Cytoplasmic	176	182	0.81
Transmembrane Helix	183	204	0.90
Non-Cytoplasmic	205	216	0.89
Transmembrane Helix	217	239	0.88
Cytoplasmic	240	253	0.95
Transmembrane Helix	254	276	0.85
Non-Cytoplasmic	277	289	0.87
Transmembrane Helix	290	313	0.90
Cytoplasmic	314	321	0.81
Transmembrane Helix	322	340	0.83
Non-Cytoplasmic	341	343	0.64
Transmembrane Helix	344	363	0.86
Cytoplasmic	364	371	0.71
Transmembrane Helix	372	393	0.91
Non-Cytoplasmic	394	404	0.63
Transmembrane Helix	405	426	0.93
Cytoplasmic	427	818	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERIYFGIYP TTRNSKKRSP RKTSPIKLRK NESFGNFMKN RVANRIVLIL FLGINLPLFS  60
   61 ESPALELSKT VDPIWLILCA ALVFFMQAGF LMLETGLSRL KNTINVAVKN LMDYIVGTIA 120
  121 FFSVGFALMF GLSYEGWIGT NHFFLTGLKT GKDFSFFLFQ VAFMGTAATI VSGAVAERIK 180
  181 FSAYLIVSVV VSLFIYPVFG HWTWGGGWIA KIGFVDFAGS TVVHSLGGWI ALAGVIVLGP 240
  241 RKDKFKEDGT PRKIHGHNLT FSVLGVFILW FGWFGFNGGS ALSFTDQVPL IILNTSLAGS 300
  301 VGGIFAITFS WIFYRVASVE DCMNGVLGGL VAITAGCHAF QPYASLIVGA LAGISVVITS 360
  361 WVLEKILKLD DVVGAFPVHG VCGIIGTLLL PILSENQDIR IYPQFIGVLT CSFWAFGLGM 420
  421 ILFLLLKISI GIRVNEEFEE KGLNVTEHGA GSSWIDLIHS LKDLAKGGGD LTRKIHVDSG 480
  481 TEAGAIAFLM NRYLANLGQM IYTIKEKSIE LEYSSSEISV AWGKMSQGIQ QQAANLGEVT 540
  541 SIFDSFRESF QTISSSAAQQ KEMETSASEL LNELVFGFQK FDSDLKNSSE KSEESVKAID 600
  601 LSRKELNQLE TDINDIGSSA KKVEGLVKLL NDISTKLGML SINASIEAAR SGAAGKGFGV 660
  661 VAEEISKLAS STQESTKKAS EILGEIQSTV SRGKTTVQTS VEFFKNLTEE FRFLAETYIT 720
  721 IRKSSLHYSN LIGNLNRLNT SITNQSEIIM TDIDKRFSEI GNLYESVDLI NGAFHEISAQ 780
  781 SEELNATGEF LKQLAEILNS LVRNFRVEQN SSQELIPG