YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28923840, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAVLNATV AGLSSTDTYF TVLEEVSKYN VQLSYPEKLW AAWYLWMQND VLATGLMSFF  60
   61 MHEIVYFGRS LPWMIIDALP MFNKYKIQKE KRPTWREQFE CAGLVLLSHC TVELPQIWLF 120
  121 HPIATYFGLD YGVPFPPLWK MALHICIFFV MEDAWHYWNH RALHYGPLYK AIHKIHHTYS 180
  181 APFGLTAEYA SPIEVMLLGI GTVGSPILWV SITKDLHLAT MYVWIVLRLF QAIDAHSGYD 240
  241 FPFSLRHFLP FWCGAEHHDL HHERFIGNYA SSFRWWDYCL DTEAGEEAAK ARRDKKLAAI 300
  301 KAKKAQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	44	0.43
Transmembrane Helix	45	66	0.59
Cytoplasmic	67	100	0.53
Transmembrane Helix	101	120	0.49
Non-Cytoplasmic	121	189	0.45
Transmembrane Helix	190	212	0.59
Cytoplasmic	213	306	0.62