YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG3_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPSSRPES NPPLYKQALD FALDVANGRH ALSKLIPPAL FLVDALLCGL IIWKVPYTEI  60
   61 DWAAYMEQVS QILSGERDYT KVRGGTGPLV YPAAHVYIYT GLYHLTDEGR NILLAQQLFA 120
  121 GLYMVTLAVV MGCYWQAKAP PYLFPLLTLS KRLHSIFVLR CFNDCFAVLF LWLAIFFFQR 180
  181 RNWQAGALLY TLGLGVKMTL LLSLPAVGIV LFLGSGSFVT TLQLVATMGL VQILIGVPFL 240
  241 AHYPTEYLSR AFELSRQFFF KWTVNWRFVG EEIFLSKGFA LTLLALHVLV LGIFITTRWI 300
  301 KPARKSLVQL ISPVLLAGKP PLTVPEHRAA ARDVTPRYIM TTILSANAVG LLFARSLHYQ 360
  361 FYAYVAWSTP FLLWRAGLHP VLVYLLWAVH EWAWNVFPST PASSAVVVGV LGVTVAGVWF 420
  421 GAREEWEPGM KSSSKKEEAA MR

Type	Start	End	Confidence
Cytoplasmic	1	34	0.89
Transmembrane Helix	35	56	0.78
Non-Cytoplasmic	57	112	0.83
Transmembrane Helix	113	135	0.89
Cytoplasmic	136	155	0.90
Transmembrane Helix	156	178	0.93
Non-Cytoplasmic	179	192	0.74
Transmembrane Helix	193	213	0.88
Cytoplasmic	214	220	0.64
Transmembrane Helix	221	242	0.87
Non-Cytoplasmic	243	274	0.92
Transmembrane Helix	275	297	0.89
Cytoplasmic	298	337	0.79
Transmembrane Helix	338	359	0.64
Non-Cytoplasmic	360	400	0.40
Transmembrane Helix	401	422	0.93
Cytoplasmic	423	442	0.69