YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18376278, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKQDAKIQ KIIARLQKRI AEGQFEEQYE AGQETRLVAA RYTKAENWPA AIDILSSVSQ  60
   61 ALLKAGAGGA GGDLAILLVD VYKQGKVKPD AASRGRLLTC LRLFEFEEPT RKKFVKEVFD 120
  121 WSRKFGDYPA GDPELHHVVG TLAAEKHETD EAEKHLVLGT KESAEVLTRM EYEWYKDSEQ 180
  181 PHTAALFAAR AILPYLLLAN VRAANTSYRA FVSALTAENS SLGVQNVESS QGSDIRIFPS 240
  241 LPLLNLLGLL LLAVQKGTPD LFRQLKTKYA SNLAELGGAW DGALEMIAEM YFGIQRPRQS 300
  301 NPLLDMMGSL FGGGGGGGGG AGAAGGRPPV RRVEAAPTAE GLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	305	0.76
Transmembrane Helix	306	326	0.69
Cytoplasmic	327	343	0.54