YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46580017, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTMRGRLPL STRIYRLRNR FGSVWPLLIG QVSLLCVFIC ATLGYMYIEG WSAFDSFYMV  60
   61 VITLSTIGFG EVHPLSSQGR LLTTLVVFAG VGNFAFIIGA FSQLLVDGKL YRYMGRRRVL 120
  121 KAIAKLRDHC IVCGYGRIGS VVAKELMEEG VALVVIENDP AMIEALETEG ILHLAGDATN 180
  181 DELLQAAGIE RARALVAALS LDSANVYVVL SAHQINPSMT IVARASEPSH IGKLKLAGAD 240
  241 RVFLPHHLGG LRMAQSILRP TVTSFIELAH TRSDLSIQME ELEIGDDSVL VGKTLIESGI 300
  301 RPQYNLIIIG VKRPDGTMHF NPESTYTLQA RDTLIAVGFP ENFKQFQEIL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	45	0.94
Non-Cytoplasmic	46	53	0.74
Transmembrane Helix	54	73	0.80
Cytoplasmic	74	80	0.74
Transmembrane Helix	81	102	0.90
Non-Cytoplasmic	103	350	0.86