YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|46450576, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHHKNNRFD GCASIVDHRT MSVQTTVISP SRLRDFALAR PVLFTVRLAL AAVYIIAGAT  60
   61 KLYDVRGFAE IVNMYGIVPI DLLPFVALLL PLVEVVAGVA LLAGRDWGLA LVTALTVLFL 120
  121 AVLGYAIWSG LSIGDCGCFA PGDIPSGHDD GSALKEAFIR DLLLLAGSLH LYLGRHTRAA 180
  181 LHVPHP

Type	Start	End	Confidence
Cytoplasmic	1	40	0.94
Transmembrane Helix	41	60	0.90
Non-Cytoplasmic	61	79	0.81
Transmembrane Helix	80	102	0.86
Cytoplasmic	103	108	0.74
Transmembrane Helix	109	129	0.92
Non-Cytoplasmic	130	156	0.88
Transmembrane Helix	157	174	0.63
Cytoplasmic	175	186	0.63