YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|153166668, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.87
Transmembrane Helix	15	33	0.91
Non-Cytoplasmic	34	39	0.82
Transmembrane Helix	40	60	0.94
Cytoplasmic	61	80	0.90
Transmembrane Helix	81	99	0.97
Non-Cytoplasmic	100	145	0.72
Transmembrane Helix	146	164	0.62
Cytoplasmic	165	171	0.82
Transmembrane Helix	172	193	0.91
Non-Cytoplasmic	194	206	0.87
Transmembrane Helix	207	227	0.88
Cytoplasmic	228	236	0.90
Transmembrane Helix	237	257	0.95
Non-Cytoplasmic	258	266	0.75
Transmembrane Helix	267	289	0.88
Cytoplasmic	290	305	0.85
Transmembrane Helix	306	324	0.83
Non-Cytoplasmic	325	330	0.72
Transmembrane Helix	331	352	0.84
Cytoplasmic	353	383	0.92
Transmembrane Helix	384	405	0.89
Non-Cytoplasmic	406	628	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRTTRYSRK YVPSIDGLRA LAVIAVIAYH LNFSWAKGGF IGVDIFFVLS GYLITNILLT  60
   61 QWEKNQSLQL KQFWIRRFRR LIPAVYVMIV VVVIYAVFFH PEILKNLRGD AIASFFYVSN 120
  121 WWFIFHNVSY FDSFGLPSPL KNLWSLAIEE QFYLIWPAFL LVFLKWVKNP KLLLKIVIGL 180
  181 GLLSAVWMTI LYVPGTDPSR VYYGTDTRAF DLLAGCALAF VWPFNRLSPV VPRKSKAVLN 240
  241 IAGTISILCF ILFTAFVSEY QPFLYRGGLL FVAILGVIMI ATISHPASYL SKIFSFKPLR 300
  301 WIGTRSYGIY LWHYPIITLT TPVLEITQPN IWRAILQVAA TFIIAELSFR FIETPIRKNG 360
  361 FINYFKGFKD KNYFIWKNKP VGKWLSIAGV VAVLAIFTLG MSNVLSVNTN AEKQQTSVKT 420
  421 TTSTPDEKKD DKKDKEDKAT KEKEDSKETD ANKANGQNQT QVPDNKNKTA ATPKTMITQT 480
  481 VAIGDSVMLD IEPYLKEAVP NITIDGLVGR QLRDAITTAT GYKKFNSENS SVILELGTNG 540
  541 PFTEEQLNDL LDQFDKATIY LVNTRVPRGW QSDVNKSIAN ASSRPNVTVV DWYSRSSGQS 600
  601 QYFAPDGVHL TKSGAQAYVA MLTSVMNK