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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|32413120, gi|...
Protein type: Transmembrane
Type Confidence: 0.71
Topology Confidence: 0.68
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLVSDLLR GAQRQVRRFS SGFAAEEPDI STPSSTSQHQ RTRSDGAALP ESVFEDGDEN  60
   61 YRRSLDGIVV GRTVAQPVAV VTTTTTTPTN VASSSHSRLG EAADVATATP EAGHTGQVPV 120
  121 PPTSAAAYES TPPARPSLTS PISAPAPEWT AQAAQQSLLT LPRIPSQVDS DARSQTGELP 180
  181 EDDGKSALRK RIQAIQNQAD ISQALKAQLI HQVMTEEYYQ QSPHAHDGTM GMRPESPSGR 240
  241 SVRSVHSVKS ARSAQSHSRD RSSNRDRDSF GPLQTALKFW NPLAGESGFS DEDTLNIHVT 300
  301 EEDLKPTYAP KTVPKRDEYG VRELDVSLAY AIAQGIQPEE ETEDLDEHGQ PVLRLGCKHY 360
  361 RRNVKLQCAA CDRWYTCRLC HDEVEDHTLP RRDTRHMLCM LCGRTQKASQ TCVGCNQSAA 420
  421 SYYCNICKLW NDDRNKPIYH CNDCGLCRVG LGLGKDFFHC KKCSACVSTR DEHRCIERST 480
  481 DCDCPICGDY LFNSPRPVAI MKCGHTIHKH CFSAHRERSY RCPVCNKSCV NMEIQFRNLD 540
  541 IAIATQPMPD EYQDARAVIS CNDCSAKSQT RYHWLGLKCS VCHSYNTVEH KLLHMPGVDG 600
  601 DQAEEEPRAV TGSSDANNGA QGVSMLPVAL DNAATAGDRR LSAARGLDPQ YPDTNGQQNR 660
  661 SIFHSDPISP PRRSALAGLF ANRNRQSPSS SSADQPHPST SNLPTTPSPS TYFPRPSSFA 720
  721 PSSPAATAAA VLASAAALVG FGGYSASAPS GAANNTLISD RAIPGMTTTR TTRRRTRGRS 780
  781 INEAAGPGVT TSADYNSDDY TDDDEESRWG EDMVTLEDVL GFLGRSPRRL VPVPQDGHTS 840
  841 IRDLIDEDDE DDESGEEESE EENYDDDDDD DIEEIGDGGF ELDLIGHR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle