YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30256002, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKIDSARTY FSIFLAASFV VALLIPLPPF ILDIIIVFLL SMSVLIYMRA TSINEWDELK  60
   61 SFPTMLLLIG IFRVSINVST TRAILTNGNA GHVIEEFGQF VIGGNLLIGI VIFTVLIIFQ 120
  121 FIVANGASRT AEVAARFTLD SLPGKQMSID ADLNQRIITE KDAQAKRKKL NMEAEFYGAM 180
  181 DGAGKFIKGD VIFGIVILFV NIIFGLIVGM MQQGMSFGEA ALHYTQLTVG DGIVNQIGSL 240
  241 MLAISTGIIV TRVFDGSPDT VTEGIFKELL AHEVVVYALG GLFIAMGIFT PLPFLPFALV 300
  301 GGTIIFLGIR NKNRIKKEKE DELQKEIEMI QGEDEQLQQV EDSFGVFTDK YPIIVELGLD 360
  361 LAALVKQKIN GETARDKVVL MRKSIITDLG INVPGINFKD NTSFRPRGRY IIRIKGAKAA 420
  421 EGVLKSGYLL ALKTPNVMAD LDAEPAKDPI FGEDGYWILE HMVQDAQMKG YQVLEPLSIL 480
  481 ITHLDVVVRR NLHELIQRQH VKDLINSLEN DNGVLLEEIK KKEIDLSLVQ NVIKQLLKEG 540
  541 ISIRDLPTII EGIIDGKEIY QNHVDGVTSF VRECISKVIC ENAKNPDGKI YAALFSDSIE 600
  601 LDADVVNNSY QGYLLNWDLD LETRVVEQVQ RVFKQARLMG REPVLLTRRK DFRFAIVRLL 660
  661 ERYQVEAQVL CISELAPEIV VDQIAYIE

Type	Start	End	Confidence
Cytoplasmic	1	8	0.86
Transmembrane Helix	9	27	0.92
Non-Cytoplasmic	28	33	0.61
Transmembrane Helix	34	51	0.94
Cytoplasmic	52	61	0.85
Transmembrane Helix	62	85	0.85
Non-Cytoplasmic	86	100	0.90
Transmembrane Helix	101	123	0.89
Cytoplasmic	124	190	0.95
Transmembrane Helix	191	211	0.93
Non-Cytoplasmic	212	231	0.91
Transmembrane Helix	232	254	0.82
Cytoplasmic	255	268	0.82
Transmembrane Helix	269	289	0.78
Non-Cytoplasmic	290	291	0.43
Transmembrane Helix	292	309	0.70
Cytoplasmic	310	688	0.55