YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28924218, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPPPADLP LAQRIQKLAQ TLQFAWFAGH ATLLLCVTRY AFSWLRMNYY GRMAQFCYRT  60
   61 TFLSAALTYG IVVYKTWRAR QKTGAKPANV VSYLTDENVQ YLLLALVWLF MPQYPIAMLP 120
  121 FAIYSVFHVA TYTRANLIPT IMPPTKVAPA AGASPSAKPQ YTQHPMSDAI GSFVKQYYDS 180
  181 SMSVVANIEL VLWIRILLSA IIFQRRSWIL LVIYTVFLRT RFAQSSHVQN SFSTFEARID 240
  241 NLIGAQGTPP AARQAWETVK GLARQFHQAT DVNKYISGAA APKKTS

Type	Start	End	Confidence
Cytoplasmic	1	20	0.85
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	55	0.75
Transmembrane Helix	56	77	0.80
Cytoplasmic	78	100	0.72
Transmembrane Helix	101	127	0.66
Non-Cytoplasmic	128	181	0.65
Transmembrane Helix	182	203	0.55
Cytoplasmic	204	286	0.53