YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28924236, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.95
Transmembrane Helix	21	44	0.89
Cytoplasmic	45	102	0.98
Transmembrane Helix	103	123	0.93
Non-Cytoplasmic	124	152	0.95
Transmembrane Helix	153	172	0.89
Cytoplasmic	173	402	0.99
Transmembrane Helix	403	426	0.91
Non-Cytoplasmic	427	446	0.91
Transmembrane Helix	447	472	0.88
Cytoplasmic	473	494	0.86
Transmembrane Helix	495	517	0.88
Non-Cytoplasmic	518	547	0.92
Transmembrane Helix	548	571	0.88
Cytoplasmic	572	588	0.78
Transmembrane Helix	589	611	0.81
Non-Cytoplasmic	612	615	0.53
Transmembrane Helix	616	637	0.80
Cytoplasmic	638	657	0.82
Transmembrane Helix	658	678	0.82
Non-Cytoplasmic	679	681	0.62
Transmembrane Helix	682	703	0.82
Cytoplasmic	704	902	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDIPSNTSD TSEAKEPVSL SGMIVTLVPI LITSAIYLAI FLVLRKSNRR YYAPRTYLGS  60
   61 LRENERSPSL SNGLFSWVKD FWKIPDVYAL QHQSLDAYLY IRYLRMAVTI CFVGCCITWP 120
  121 VLFPVNATGG NGLKQLDILT YGNINRETRY NRYYAHVFIS WIFFGFVMYL IMRECIFYIN 180
  181 LRQAFLISPL YSQRISSRTV LFTSVPEPYL DEQRLRKVFG ASVKNVWITS ETKEVDELVE 240
  241 ERDKVAMRLE KAEVKLIKLA NQIRRKAMSK GDVNDVDKQA PLDAESGSIA ARWVPRNKRP 300
  301 THRLGPLGLI GKKVDTIDWC REELTRLIPE AEAAQDKYRD GAFKKVPGVF IEFRTQADAE 360
  361 GAAQILAHHR GLHMTPKYIG IRPNEIVWKS LAIPWWQRVI RRYAVYAFIT AMIIFWAIPV 420
  421 GVVGIISNVN YLKTISFLTW LDDIPGFILG AVTGLLPSIA LSILMSLVPI VIRICAKLSG 480
  481 EPSLSRVELF TQHAYFAFQV IQVFLVATVA SSATAVAKQI ADNPGSVTKL LSENLPKSSN 540
  541 FYISYFIVQG LSIATSVLTQ VVGFFVFNLV YKFLANTPRA LYTKWANLSA ISWGSTMPVY 600
  601 TNIVVIAIAY ATIAPLMLGW ATVAMGLFYL AWRYNVLFVT DTQIDTRGLI YPRAIKQLYT 660
  661 GIYLAEICMI GLFGASVAPG PLVLMVIFLI FTILFHISMN AALNPLLYNL PLTLLAEEEG 720
  721 PLLDTPVDSH TAENGLGGEP RNGVSPTTGA NYTEKVPSNG TNGAQSRAED PILGAKEALD 780
  781 ASRHQPNHVT GKKPNFLVKF LKPWIYSDYD TLRAYLPRGV QLDPYTEEVE RDAYCPPNVT 840
  841 SDVPLLWIPS DANGAGVSRQ EVEHTSRVVP ITDEGCELDE KGHLVWDREG TRPPIWEEKI 900
  901 YY