YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28924093, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.66
Transmembrane Helix	39	61	0.80
Cytoplasmic	62	138	0.72
Transmembrane Helix	139	160	0.82
Non-Cytoplasmic	161	221	0.85
Transmembrane Helix	222	240	0.66
Cytoplasmic	241	255	0.67
Transmembrane Helix	256	276	0.76
Non-Cytoplasmic	277	279	0.55
Transmembrane Helix	280	299	0.81
Cytoplasmic	300	309	0.85
Transmembrane Helix	310	330	0.89
Non-Cytoplasmic	331	397	0.90
Transmembrane Helix	398	417	0.86
Cytoplasmic	418	470	0.66
Transmembrane Helix	471	492	0.89
Non-Cytoplasmic	493	510	0.58
Transmembrane Helix	511	535	0.77
Cytoplasmic	536	636	0.66
Transmembrane Helix	637	655	0.74
Non-Cytoplasmic	656	663	0.34
Transmembrane Helix	664	683	0.61
Cytoplasmic	684	730	0.42
Transmembrane Helix	731	757	0.75
Non-Cytoplasmic	758	775	0.45

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFATSILRSA YPAYKSPYGP KYQYQPHIDG ITPKQLVRIL PTAAAWTGVA LFAVVYYASG  60
   61 IPRLRRDVLQ RIPYLGERYF VNEIPASDNG RWGLRLHIKP PYPSLSTTST FNEVLRGLAI 120
  121 SILLAKLTQS TTSSSKSQGS TFITASGFIL IYFFARSWLA LVNHYAPEPY LDEVFHIPQA 180
  181 QTYCEGRYHE WDNKITTPPG LYLLSVGWHK LVRLVECTPS SLRSNNLVAT LLIALIALSC 240
  241 RRRIEAQTAV GIEKSAVSFY AYHTAINIAL FPVIFFFSGL YYTDVASTLV MLVAYWNHLN 300
  301 RVASHSEKPG FLNGLWTVVL GVAALFMRQT NVFWVVVYMG GLEAAHVVKG LKPKPVSKND 360
  361 TPDFVLENIR DSFGFWLRRY AVGDVHDPPV DMAWPDDWAL CLLSIGIAAL CNPLRVLRQV 420
  421 WPHITIMGLF AGSGPTPASS SSSSSSFSPD TNSSGRGFRF ILDLVLSRKL YYPFYLLATI 480
  481 LLSAAIIHYN TIIHPFTLAD NRHYMFYIFR YTILRSSLVR LALVAAYTLS RWLIWKRLEG 540
  541 NNPPLRDLAG ETGLKITKNK LGWRDEFSAS PFVTQDFYGP KTIKTDEQKN IKDKQKEVEE 600
  601 EEEEEEKEDW LIGGAYTTLS LSSTQPSPAT SSPPTSTVLL WLLTTTLSLV TAPLVEPRYF 660
  661 ILPWVFYRLL VPAMPVSSSL VSSSSSSSFA SSTTESGNGD GNDAATAARQ QQNGNGKRGL 720
  721 LWNIIRRTDA ALALETVWFL AINIGTMYMF LFKPFYWKTA SGEMLDGGRL QRFMW