YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ATG22_NEUCR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	162	0.97
Transmembrane Helix	163	185	0.92
Non-Cytoplasmic	186	232	0.95
Transmembrane Helix	233	255	0.91
Cytoplasmic	256	264	0.87
Transmembrane Helix	265	283	0.97
Non-Cytoplasmic	284	289	0.79
Transmembrane Helix	290	313	0.88
Cytoplasmic	314	395	0.96
Transmembrane Helix	396	417	0.92
Non-Cytoplasmic	418	423	0.81
Transmembrane Helix	424	446	0.89
Cytoplasmic	447	486	0.94
Transmembrane Helix	487	506	0.87
Non-Cytoplasmic	507	523	0.73
Transmembrane Helix	524	547	0.91
Cytoplasmic	548	557	0.87
Transmembrane Helix	558	578	0.92
Non-Cytoplasmic	579	597	0.82
Transmembrane Helix	598	618	0.90
Cytoplasmic	619	628	0.94
Transmembrane Helix	629	652	0.83
Non-Cytoplasmic	653	660	0.76
Transmembrane Helix	661	681	0.93
Cytoplasmic	682	737	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKISGLCVF KWYPLYAYQC PATGPSVQLK YSAMTPRHNN NVNHVYNGPD IQWEDESLRP  60
   61 PPAPRLFSRS SYASYASKAS KRSFYSYTSS CFEADDERSD TLSFADWITT TMSGRMSPAN 120
  121 AGDNSDSYPY GDDTDGDSSS GLPPPRYPGD DTRPTSQKEL AGWYAYAFAA EVYVICGIGS 180
  181 FIPILLESLA RENGVLLSDR SKPCGSSSDK HTTSAEGQCV VYVLGMEINT ASFAMYTFSV 240
  241 SVLLQALLVV SISCAADHGN FRKKLLLAFA WIGSACVMAY IFISKSTYLI GALLAIISNT 300
  301 SFGASFVLLN SFLPLLVRHH PEIDQVGDYG SPGYATTEEG DDEDDEYQED STRNSTTALL 360
  361 GSRRYEEGEP LSRVQTTEEL TSRELELSTQ ISAKGIGIGY IAGLFLQCVA IAILITLKNT 420
  421 TWSQRIVLCV IGAWWAIFTI PAAMWLRPRP GPPLPTKSNT GGIRALFHYT IYAWKSLFRT 480
  481 IHLARRLVDI VLFLAGWFLL SDAIATTSST AILFAKTQLH MEPWALGMIN VISTASGILG 540
  541 AFSWSFISRK FRLKAHQTIL ACIALFELIP LYGLMGYLPF VQAWGVGGLQ QPWEMYPLAA 600
  601 IYGFVLGGLS GYCRSLYGEL IPPGSEAAFY ALYAITDKGS SVFGPAIVGA IIDASGEIRP 660
  661 AFWFLAAIVG TPALFIWFIN VERGRTEGEA LAEIIEGFKM NGQNGLNGNG ADGLADDRRG 720
  721 SDASRAILGR YDDEDEE