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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|49183482, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.32
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGRIKGITI EIGGETTGLQ SALKDVNKRS SELSKELKDI ERLLKFNPGN VEALAQKQQL  60
   61 LTQQIENTTK KLDSLKSAQQ QVQAQFESGA ISEEQYRAFR REIEFTEGQL NGFKNSLAGL 120
  121 KAEQEKAASS TRQLETLFSA TGKSVDDFAD ALGNRLVNAI KNGTASSRQL EQAIEIVGRE 180
  181 ALGAEADIGK LQQALRSVDD GNSIQNIRND LNQLSQEAEE ASESVKGLGV ELENVLGGIV 240
  241 AGGGIQEVIG QALDMSELKT KIDITFDVPE SSKRSVEDAI RTVVAYGGDA EEALEGVRRQ 300
  301 WSLNKDASDA ANTEIIKGAA NIASSYSQID FTELIQETNE IGSELNISNK EALGLVNSLL 360
  361 KIGFPPEQLD IIAEYGAQLR RVGYTAQEVQ SIMASAAKEK SWNIDNLLDG LKEGRIRSVE 420
  421 MARGLSNSMK DAVRDAVDDT EKMSDAQISA MQKGFAKQES ALANSFSNQE KALSKSHSRR 480
  481 QNELAKSLDA EYNAVSKSYE NQQKNLEKKL SAEYDAASKN YDRQQKALEK SLDAEVKAFE 540
  541 KSSEQKIKLI DKEYMERMKL IDEEKYNRLK AVDDQINSLD AKTAAEDKYF KDRENAEKRA 600
  601 DLKVKISKAK NEEERQAAIK ALRDLEEKMR LDKIREERKS QIDRLKEEKD SIKEASDAKK 660
  661 EALKSEFDSR KERVKEQINN EKEALKERQQ EQKEAFQQNK QENLKAISES NKAQLDSLRE 720
  721 VNQANLSALK ENHNERKQAL SERLSDEMDA VRESHRAELE SFKEMNAEKL ELAKNPPDSA 780
  781 AVQEIFAQLE GWGKAIAKGG EEGKQAFVDM VKWLDQIEDA DLKEAIGVEL FGTMWEDQGQ 840
  841 KIINTILQTE QKQADLKQGI DDLQQSVSKT DASPMVKLKE AMNDLKQALE PILLIIADVV 900
  901 SAFAGFISAH PVLAAAITAI TVAIGILVGI CAALAPVIFL ATSGAITFAG VMAALTSPIA 960
  961 LVVAAIAGLI AIWVLFGDKI MAIYNEYFKP TIDQIVSIIV STLKPVFEQG FAIIKDVVQD1020
 1021 AFIIIQRVWN EILSPVFSVI TSIIKTVLLP AFKFVFSAIG SVVSDAFSGI KDMWNNVLKP1080
 1081 ILNGIIDFIS GIFSGNWEKA WGGIVKIFSG VFEGIKSAAK APINAVVSML NGLIEGINSI1140
 1141 EMPDWVPFVG GSKPSIPRIP MLATGGHVLG DGSFIAGEAG PELFTKRGNR VSVTPLSSTE1200
 1201 KSLGITGTMS RLIGDMSYSM ASSMKELSGL KSVMSNVYGS MASSSQAMSR NASQRTAEGN1260
 1261 SSSNANKSDS YNFADMFRGS TFVVREEADV QKLAVELGKY IKASGRRVGQ L

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle