YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49177795, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.81
Transmembrane Helix	7	25	0.92
Non-Cytoplasmic	26	46	0.76
Transmembrane Helix	47	67	0.92
Cytoplasmic	68	75	0.86
Transmembrane Helix	76	96	0.94
Non-Cytoplasmic	97	115	0.80
Transmembrane Helix	116	134	0.60
Cytoplasmic	135	222	0.57
Transmembrane Helix	223	239	0.80
Non-Cytoplasmic	240	315	0.78
Transmembrane Helix	316	337	0.88
Cytoplasmic	338	354	0.88
Transmembrane Helix	355	373	0.90
Non-Cytoplasmic	374	401	0.89
Transmembrane Helix	402	421	0.95
Cytoplasmic	422	440	0.91
Transmembrane Helix	441	460	0.94
Non-Cytoplasmic	461	471	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFSSSIFLF IFLPLVLFFY FIVRAELRNF VLLAFSLIFY AWGEPRFVLL MLFSILLNYC  60
   61 FGLLVHHYDK RKNMKVTFLI MAVIGNILLL SYFKYISFFT DILNNVLHLS IHVEPIPLPI 120
  121 GISFYTFQAM SYVIDIYRKD GDVQKNPLNL ALYISIFPQL IAGPIVRYNI VAEQIKTRIH 180
  181 SFERFTEGIQ IFVLGLAKKI LIANQVGFVA DKIFALPPSE MSVGTAWIGI IAYTLQIYFD 240
  241 FSGYSDMAIG IGKMFGFDFP KNFNYPYISK SISEFWRRWH ITLGSWFRDY IYIPLGGNRV 300
  301 SKLANYRNLF IVWGLTGLWH GASWTFIAWG LYYGFIISIE KAGFEKILNK LWKPLQHAYV 360
  361 LLIVMIGWVF FRADNFAYSF QYLKAMFGID GQSFIDDNTM LYVHEYIIVF LIAFIAATPI 420
  421 LKRMKNILEL APKTYMFTTQ FVRPILLLTL FMISVMYLIN STYNPFIYFR F