YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30257003, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.89
Transmembrane Helix	9	30	0.92
Non-Cytoplasmic	31	40	0.91
Transmembrane Helix	41	64	0.88
Cytoplasmic	65	70	0.95
Transmembrane Helix	71	91	0.90
Non-Cytoplasmic	92	96	0.76
Transmembrane Helix	97	120	0.87
Cytoplasmic	121	131	0.86
Transmembrane Helix	132	152	0.92
Non-Cytoplasmic	153	164	0.88
Transmembrane Helix	165	187	0.91
Cytoplasmic	188	211	0.93
Transmembrane Helix	212	232	0.94
Non-Cytoplasmic	233	239	0.87
Transmembrane Helix	240	262	0.87
Cytoplasmic	263	275	0.76
Transmembrane Helix	276	296	0.91
Non-Cytoplasmic	297	300	0.80
Transmembrane Helix	301	325	0.86
Cytoplasmic	326	338	0.82
Transmembrane Helix	339	359	0.95
Non-Cytoplasmic	360	365	0.77
Transmembrane Helix	366	385	0.94
Cytoplasmic	386	400	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSAVNPWL VVLGTVIVQM GLGTIYTWSL FNQPLVSKYG WSLNAVAITF SITSLSLAFS  60
   61 TLFASKLQEK WGLRKLIMIA GLALGLGLIL SSQASSLILL YVLAGVVVGY ADGTAYITSL 120
  121 SNLIKWFPER KGLIAGISVS AYGSGSLIFK YVNAQLIESV GVSQAFIYWG LIVTAMIVLG 180
  181 ACLIHQAADQ SAVQETKTHE YTTKEMLGTK QVYLLFIMLF TSCMSGLYLI GMVKDIGVEL 240
  241 VGLSAATAAN AVAMVAIFNT LGRIILGPLS DKIGRLKIVT GTFVVMASSV LVLSFVDLNY 300
  301 GIYFVCVASV AFCFGGNITI FPAIVGDFFG MKNHSKNYGI VYQGFGFGAL AGSFIGALLG 360
  361 GFKPTFMVIG LLCVVSFIIA MLIQAPNQKK EQEEEYRSVA