YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30257294, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.90
Transmembrane Helix	9	30	0.93
Non-Cytoplasmic	31	44	0.84
Transmembrane Helix	45	64	0.93
Cytoplasmic	65	71	0.86
Transmembrane Helix	72	92	0.90
Non-Cytoplasmic	93	98	0.74
Transmembrane Helix	99	120	0.91
Cytoplasmic	121	131	0.82
Transmembrane Helix	132	152	0.93
Non-Cytoplasmic	153	164	0.87
Transmembrane Helix	165	184	0.94
Cytoplasmic	185	211	0.93
Transmembrane Helix	212	232	0.94
Non-Cytoplasmic	233	239	0.84
Transmembrane Helix	240	262	0.84
Cytoplasmic	263	277	0.75
Transmembrane Helix	278	296	0.95
Non-Cytoplasmic	297	303	0.62
Transmembrane Helix	304	326	0.88
Cytoplasmic	327	338	0.76
Transmembrane Helix	339	359	0.95
Non-Cytoplasmic	360	365	0.76
Transmembrane Helix	366	385	0.94
Cytoplasmic	386	402	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQTSINPLL IVLGTIIVQI GLGTIYTWSL FNQPLVSKFG WNLNSVAITF SITSFSLSFS  60
   61 TLFAGKLQQK LGLRKLIATA GIVLGLGLIL SSQVSSLPLL YLLAGVVVGY ADGTAYITSL 120
  121 SNLIKWFPNR KGLISGISVS AYGMGSLIFR YINGNLIDNL GVSQAFLYWG IIVLLLVLIG 180
  181 SFFLREAIVS NAVTETLHND YTPREMMGTK QVYLLFFMLF TSCMGGLYLI GMVKDIGVQL 240
  241 VGLSTATAAN AVAMIAIFNT VGRIVLGTLS DKIGRMKIVS ATFIIIGLSV FTLSFIPLNY 300
  301 GIYFACVASF AFCFGGNITI FPAIVGDFFG LKNHSTNYGI VYQGFGFGAL AGSFIGAILG 360
  361 GFQPTFIIIG VLSVISFIIS ILIRPPNAEK KNELKHLHRK VA