YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30257970, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	4	0.73
Transmembrane Helix	5	23	0.87
Non-Cytoplasmic	24	26	0.63
Transmembrane Helix	27	46	0.84
Cytoplasmic	47	56	0.69
Transmembrane Helix	57	78	0.87
Non-Cytoplasmic	79	104	0.88
Transmembrane Helix	105	128	0.91
Cytoplasmic	129	138	0.83
Transmembrane Helix	139	158	0.94
Non-Cytoplasmic	159	176	0.88
Transmembrane Helix	177	200	0.89
Cytoplasmic	201	221	0.96
Transmembrane Helix	222	245	0.90
Non-Cytoplasmic	246	256	0.83
Transmembrane Helix	257	281	0.89
Cytoplasmic	282	297	0.93
Transmembrane Helix	298	319	0.89
Non-Cytoplasmic	320	333	0.87
Transmembrane Helix	334	364	0.74
Cytoplasmic	365	374	0.65
Transmembrane Helix	375	396	0.83
Non-Cytoplasmic	397	417	0.71
Transmembrane Helix	418	440	0.87
Cytoplasmic	441	441	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMYLLMITL LSIVIVILGV SWWRWHAFIS LTIASLFLAI MSGMPMDKIV SAYETGVGSV  60
   61 LGHLVGILVL GTILGKMMAE SGAGMQVAEF FIKSFGIKNL PWAMLIAGFI IGIPVFFEVG 120
  121 ILILLPLVIS IHKTTKQNIL LIALPAIAGL SVVHGLVPSH PGAIVAIGIY KANLGKVLLY 180
  181 SLIITFFAAI IAGPIFAKWI HKRVIPENEP ELIRVNTKST KLPGIGVSFL VILLPVMLMV 240
  241 LAAAAPYVPL STTLMKIVTL IGSPIIALLI ACFAAFYFLG FRQGIDKKAI KKVTEDSLLP 300
  301 IGSIVAIIGA GGGFKQILID SGVGNAIAQM SEHLALSPIV LAFMVAGLIR IATGSATVAL 360
  361 TTAAGIVSPI VENTTGVNLE LLVIATGAGA LMFSHVNDAG FWMVKEYLGL TVKETFKTWT 420
  421 VLETLLSFIA FGGVLLLDMF I