YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30263395, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSKTGVLLG RLMRNIMRSP DTIITVAITP IMMMLLFVYV FGGAIQTGTD NYVNYLLPGI  60
   61 LLMAIASGVA YTSVRLFTDV KSGLMARFIT MPIKRSSILW AHVLTSLVAN VLTILVVILV 120
  121 ALLMGFRSSA NILDWLGVAG ILGMFTLALT WLAIIPGLTA KSMEGATAYS YPLVFLPFIS 180
  181 SAFVPTETMP KIVRVFAENQ PVTSIVNAVR ALLYEGTVGN DIWIALTWCV GIMIISYFFA 240
  241 SKAFKRQIG

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	43	0.93
Non-Cytoplasmic	44	55	0.86
Transmembrane Helix	56	78	0.93
Cytoplasmic	79	97	0.98
Transmembrane Helix	98	123	0.93
Non-Cytoplasmic	124	134	0.81
Transmembrane Helix	135	155	0.94
Cytoplasmic	156	166	0.79
Transmembrane Helix	167	186	0.91
Non-Cytoplasmic	187	221	0.94
Transmembrane Helix	222	241	0.95
Cytoplasmic	242	249	0.90