YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30258102, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.98
Transmembrane Helix	10	31	0.88
Non-Cytoplasmic	32	38	0.72
Transmembrane Helix	39	58	0.94
Cytoplasmic	59	67	0.86
Transmembrane Helix	68	90	0.92
Non-Cytoplasmic	91	97	0.84
Transmembrane Helix	98	119	0.94
Cytoplasmic	120	128	0.78
Transmembrane Helix	129	151	0.89
Non-Cytoplasmic	152	160	0.76
Transmembrane Helix	161	180	0.94
Cytoplasmic	181	192	0.76
Transmembrane Helix	193	213	0.93
Non-Cytoplasmic	214	222	0.76
Transmembrane Helix	223	247	0.89
Cytoplasmic	248	260	0.86
Transmembrane Helix	261	292	0.70
Non-Cytoplasmic	293	322	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLEAISNI AGKYFAFWVI CIATIAYFIP APFLGLNSYI TILLGVVMFG MGLTLKAVDF  60
   61 KIIATKPLPV IIGVCAQFII MPLVAYVLAY VMNLPAELAA GLVLLGSVPG GTASNVMVYL 120
  121 AKGNLALSIA MTSLSTLLAP IATPLILLLL AGQWMPVNPM SMFLSIVQVI IIPIILGLVV 180
  181 KKFFPKTVTK GMTVIPFISV LAIIIIVSAV VSANVSSITS SGLLILIAVM LHNAFGFLLG 240
  241 YITAFILKLD EGTRRAISIE VGMQNSGLGV ALATAHFGPA AALPSVLAAV WHNIAGPILA 300
  301 TIWSKNAKNT FSDENVSVNI EK