YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254739550
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	303	0.51
Transmembrane Helix	304	325	0.90
Cytoplasmic	326	333	0.45
Transmembrane Helix	334	358	0.85
Non-Cytoplasmic	359	374	0.46
Transmembrane Helix	375	400	0.85
Cytoplasmic	401	417	0.48
Transmembrane Helix	418	438	0.91
Non-Cytoplasmic	439	454	0.43
Transmembrane Helix	455	479	0.78
Cytoplasmic	480	495	0.37
Transmembrane Helix	496	520	0.83
Non-Cytoplasmic	521	531	0.39
Transmembrane Helix	532	551	0.45
Cytoplasmic	552	557	0.72
Transmembrane Helix	558	580	0.87
Non-Cytoplasmic	581	596	0.81
Transmembrane Helix	597	617	0.95
Cytoplasmic	618	622	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITELLKRD TVIMNLTASN KEAVIDELVE KLNGANRLNS KAEFKEAILK RESQSTTGIG  60
   61 EGIAIPHAKT KAVKQPAICF GRSVSGINYE SLDGQPAHLF FMIAASEGAN NTHLETLSRL 120
  121 STLLMDEGFR KQLLEAKDEE ELLRLFDEKE NEKENEKEEE VEVAQPEGNE PYVLAVTACP 180
  181 TGIAHTYMAA DSLKAKAAEL GIAIKVETNG STGIKNGLTK EDIERATAII VAADKQVEMN 240
  241 RFAGKHVIQV PVADGIRKTE KLLNRAVKQD APIFKGIKED GKTESTEKEK GLGIYKHLMN 300
  301 GVSNMLPFVV GGGILIALAF SFGGIKAEGP LAELFMSIGG GGTGAFLFLV PILAGFIASS 360
  361 IADRPGFMPG VVGGFLAAHA NAGFLGGLIA GFLAGYVVLG LKRLFSGLPV QLEGIKPVLL 420
  421 YPVFGLLITG VVMQKVVIPP VVALNEMLTG WLNGLNGTNA ILLGLILGAM MAIDMGGPIN 480
  481 KAAFTFGIAA IEAQNFGVHS AVMAGGMVPP LAIAFATTFF KSKFTEAERK SGLTNYIMGA 540
  541 SFITEGAIPF AAADPVRVIV SCVVGSSIAG ALSMLFQITL PAPHGGLFVI ALVNKPVLYI 600
  601 FSILIGAVVS ALMMGIWKKK VK