YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30264905, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	2	0.96
Transmembrane Helix	3	23	0.87
Non-Cytoplasmic	24	27	0.71
Transmembrane Helix	28	47	0.91
Cytoplasmic	48	56	0.71
Transmembrane Helix	57	78	0.87
Non-Cytoplasmic	79	103	0.91
Transmembrane Helix	104	128	0.90
Cytoplasmic	129	137	0.87
Transmembrane Helix	138	158	0.93
Non-Cytoplasmic	159	176	0.92
Transmembrane Helix	177	197	0.94
Cytoplasmic	198	228	0.93
Transmembrane Helix	229	250	0.94
Non-Cytoplasmic	251	256	0.94
Transmembrane Helix	257	280	0.92
Cytoplasmic	281	297	0.93
Transmembrane Helix	298	319	0.91
Non-Cytoplasmic	320	333	0.75
Transmembrane Helix	334	367	0.73
Cytoplasmic	368	375	0.42
Transmembrane Helix	376	396	0.79
Non-Cytoplasmic	397	417	0.52
Transmembrane Helix	418	440	0.88
Cytoplasmic	441	441	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIYLLIVTL LAIAIVILGV SWWKWHAFIS LTVASLFLAI MSGLNLTKIV TAYESGVGSV  60
   61 LGHLVGILAL GTILGKMMSD SGAGMQVADF FIRFFGVKKL PWAMLFAGFV IGIPVFFEVG 120
  121 IVILLPLVIS IRKTTKQNIL LIALPVIAGL SIVHGLVPPH PGAMTAIGIY NANLGKVLLY 180
  181 SLLIALPTAI IAGPIFAKWV HKRVIPENEP ELIRVTTVST DLPSRKVSFF IILLPVVLMI 240
  241 LSVVAPYISL PKKMTEFFVF IGSPVIALLI SCFAAFYLLG MRQGINKKMI KKLTDESLLP 300
  301 VGSIILIIGA GGGFKQILIE SGVGTAIAQM AEHISLSPIV LAFMVAGLIR IATGSATVAL 360
  361 TTAAGIVSPV IQHMSGVNLE LLVIATGAGS LMFSHVNDAG FWLVKEYLGL TVKETFKTWT 420
  421 VLETLLSFIA FGFALVLNMF L