YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49478953, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITELLKRD TVIMNLTASN KEAVIDELVE KLNGANRLNS KAEFKEAILK RESQSTTGIG  60
   61 EGIAIPHAKT KAVKQPAICF GRSVSGINYE SLDGQPAHLF FMIAASEGAN NTHLETLSRL 120
  121 STLLMDEGFR KQLLEAKDEE ELLRLFDEKE NEKEEEEVEV AQPEGNEPYV LAVTACPTGI 180
  181 AHTYMAADSL KAKAAELGIA IKVETNGSTG IKNGLTKEDI ERATAIIVAA DKQVEMNRFA 240
  241 GKHVIQVPVA DGIRKTEKLL NRAVKQDAPI FKGIKENGKT ESTEKEKGLG IYKHLMNGVS 300
  301 NMLPFVVGGG ILIALAFSFG GIKAEGPLAE LFMSIGGGGT GAFLFLVPIL AGFIASSIAD 360
  361 RPGFMPGVVG GFLAAHANAG FLGGLIAGFL AGYVVLGLKR LFSGLPVQLE GIKPVLLYPV 420
  421 FGLLITGVVM QKVVIPPVVA LNEMLTGWLN GLNGTNAILL GLILGAMMAI DMGGPINKAA 480
  481 FTFGIAAIEA QNFGVHSAVM AGGMVPPLAI AFATTFFKSK FTEAERKSGL TNYIMGASFI 540
  541 TEGAIPFAAA DPVRVIVSCV VGSSIAGALS MLFQITLPAP HGGLFVIALV NKPVLYIFSI 600
  601 LIGAVVSALM MGIWKKKVK

Type	Start	End	Confidence
Cytoplasmic	1	298	0.50
Transmembrane Helix	299	322	0.85
Non-Cytoplasmic	323	330	0.45
Transmembrane Helix	331	358	0.80
Cytoplasmic	359	371	0.37
Transmembrane Helix	372	396	0.86
Non-Cytoplasmic	397	414	0.44
Transmembrane Helix	415	435	0.91
Cytoplasmic	436	447	0.42
Transmembrane Helix	448	474	0.76
Non-Cytoplasmic	475	492	0.48
Transmembrane Helix	493	517	0.83
Cytoplasmic	518	554	0.57
Transmembrane Helix	555	577	0.87
Non-Cytoplasmic	578	593	0.81
Transmembrane Helix	594	614	0.95
Cytoplasmic	615	619	0.86