YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49480224, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	10	0.86
Transmembrane Helix	11	30	0.90
Cytoplasmic	31	65	0.77
Transmembrane Helix	66	85	0.77
Non-Cytoplasmic	86	91	0.60
Transmembrane Helix	92	115	0.82
Cytoplasmic	116	135	0.93
Transmembrane Helix	136	158	0.90
Non-Cytoplasmic	159	171	0.83
Transmembrane Helix	172	195	0.88
Cytoplasmic	196	203	0.78
Transmembrane Helix	204	225	0.93
Non-Cytoplasmic	226	233	0.85
Transmembrane Helix	234	256	0.89
Cytoplasmic	257	294	0.90
Transmembrane Helix	295	316	0.89
Non-Cytoplasmic	317	354	0.93
Transmembrane Helix	355	376	0.92
Cytoplasmic	377	393	0.90
Transmembrane Helix	394	414	0.89
Non-Cytoplasmic	415	420	0.56
Transmembrane Helix	421	443	0.81
Cytoplasmic	444	486	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAFVNWLNN IVWSPALVYL CLGVGLYFSI RTRFLQVRHV GEMVKLTFKG EKSEAGVSSF  60
   61 QALALSLSGR VGTGNIAGVA TAVAFGGPGA VFWMWAVAFL GAGSAYVEST LAQIYKTKHQ 120
  121 GQFRGGPAYY IEKGLGVKWY ALVFVAATIL ATGLLLPGVQ ANSIAVSLET AFGINTTLSG 180
  181 ALLVVVLALI IFGGVKRIVN VAQVVVPFMA VGYILVACVI VAMNIEKLPE AFMLIIRSAF 240
  241 ALEAAFGGII GLAISWGVKR GIYSNEAGQG TGPHAAAAAE VSHPAKQGLV QAFSVYIDTL 300
  301 FVCSATAFMM IITGMYNVFD ASGKNFIVNK LNGAQPGPGY TQAAVESVFP GFGNGFVAIS 360
  361 LLFFAFTTIM AYYYIAETNI AYLNRDKDRP WLSMVLKFVF LGAVFYGCIK TAATAWALGD 420
  421 IGVGIMAWVN IIAILLLQKP ALVALKDYEK QKKEGKDPVF DPGPLGIKNA DFWEHEYGKD 480
  481 KKEEVS