YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30265436, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	26	0.97
Non-Cytoplasmic	27	33	0.76
Transmembrane Helix	34	52	0.96
Cytoplasmic	53	87	0.97
Transmembrane Helix	88	109	0.93
Non-Cytoplasmic	110	116	0.81
Transmembrane Helix	117	138	0.95
Cytoplasmic	139	157	0.92
Transmembrane Helix	158	182	0.91
Non-Cytoplasmic	183	190	0.76
Transmembrane Helix	191	210	0.94
Cytoplasmic	211	220	0.74
Transmembrane Helix	221	240	0.93
Non-Cytoplasmic	241	254	0.86
Transmembrane Helix	255	276	0.91
Cytoplasmic	277	283	0.88
Transmembrane Helix	284	305	0.90
Non-Cytoplasmic	306	324	0.91
Transmembrane Helix	325	345	0.94
Cytoplasmic	346	364	0.88
Transmembrane Helix	365	389	0.83
Non-Cytoplasmic	390	398	0.70
Transmembrane Helix	399	418	0.70
Cytoplasmic	419	434	0.69
Transmembrane Helix	435	457	0.71
Non-Cytoplasmic	458	463	0.68
Transmembrane Helix	464	486	0.81
Cytoplasmic	487	508	0.89
Transmembrane Helix	509	528	0.94
Non-Cytoplasmic	529	544	0.81
Transmembrane Helix	545	566	0.90
Cytoplasmic	567	572	0.90
Transmembrane Helix	573	593	0.94
Non-Cytoplasmic	594	639	0.96
Transmembrane Helix	640	664	0.88
Cytoplasmic	665	691	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLKSILLW GVIAAVGAGA FGVIALSQGE TINAVWLLVA AVCVYAVAYR FYSRFIARKV  60
   61 FGLDNNRQTP AHTLNDGKDY VPTNKWVLFG HHFAAIAGAG PLVGPILAAQ MGYLPGTIWI 120
  121 IVGVVVAGAV QDFIILFASM RRNGKSLGEM IKDEIGPVTG LIAMIGILGI MIILLAVLAL 180
  181 VVVKALVGSP WGMFTIAATI PIAILMGVYM RYIRPGRVGE GSAIGIILLI LSLIGGQYVA 240
  241 ENPALASMFT FSGETIAIML IVYGFIASAL PVWMLLAPRD YLSTFLKVGT IVGLAIGILI 300
  301 VAPDLQMPAV SKFIDGTGPV FSGNLFPFLF ITIACGAVSG FHALVSSGTT PKMIEQEGHA 360
  361 QPIGYGAMLM ESFVAAMAMI AACVLTPGTY FAINSPAALI GTDVSQAAQV ISSWGFAITP 420
  421 NELKDLAVNV GEQTILSRTG GAPTLAIGMA YIFSQVIGGT AMMAFWYHFA ILFEALFILT 480
  481 TIDAGTRVGR FMIQDILGHV YKPFGKTDST LANVIATTLC VLGWGYFLYQ GVVDPLGGIN 540
  541 TLWPLFGIAN QMLAGIALLL GTTILFKMGK KAYVWVTLIP TVGLLIVTMT AGYQKLFHEN 600
  601 PKIGFLSHAK VFQGALDEGK VLAPAKNVAQ MKQIIFNDYI DAALCGIFMI VVIAVLISAL 660
  661 RIWIQVLRNK PMPLKEAPYI PRDESESRNY A