YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49481166, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.96
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	149	0.99
Transmembrane Helix	150	170	0.94
Cytoplasmic	171	183	0.88
Transmembrane Helix	184	204	0.93
Non-Cytoplasmic	205	229	0.93
Transmembrane Helix	230	251	0.92
Cytoplasmic	252	261	0.80
Transmembrane Helix	262	280	0.93
Non-Cytoplasmic	281	296	0.81
Transmembrane Helix	297	317	0.95
Cytoplasmic	318	336	0.91
Transmembrane Helix	337	357	0.94
Non-Cytoplasmic	358	370	0.77
Transmembrane Helix	371	391	0.95
Cytoplasmic	392	402	0.90
Transmembrane Helix	403	423	0.90
Non-Cytoplasmic	424	544	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRVGTWLLL ACVLIILIPK SASAHAYVVK SNPTENETLK KAPSVVKIEF DEDIQVSSFN  60
   61 TLYVRDTSGT RVDLKDAHID KKNKKLLEAG LKENLKNGLY SIQWKVISAD GHPIQGVIPF 120
  121 RIGLAEVEAD GIQVEEMGYV PQIDMIMERG ILYTSFSLFI GVLFFNLIMY KGNATSVRSR 180
  181 SKNIIWISLF GILISLLFNL PLQAKINADV SWLEAFNPLL LKETLQLSVF GYVWITQMTL 240
  241 ISSLIIVTYF AMRREKLSSF KVWSIPIVLF IGILVMKACN SHAYGLKFKD IAVVMDFLHL 300
  301 FAASLWIGGL SSIILLLRKE DNKWSMYWDM IKRFSPWATC AVIVIFITGL FNSTFFIPTI 360
  361 HSLFDTKYGL ALLAKILLFI FMGILGIIHY VKGKMRAEQG LGATVKVEFI IGIIIFVIVA 420
  421 FMTNVQTPPM PPTGPFTESK QLDNGYEMTL NVSPNKVGQN IFHITLKDEN GQPVTDMEQI 480
  481 ILTTQSLDMN MGKGSFKVSA VSPGEYEAEG MYINMTGNWN IQVHGLTKSL DSFDTDYKFI 540
  541 VGGR