YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49481181, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.93
Transmembrane Helix	31	53	0.89
Non-Cytoplasmic	54	71	0.84
Transmembrane Helix	72	91	0.93
Cytoplasmic	92	98	0.75
Transmembrane Helix	99	121	0.87
Non-Cytoplasmic	122	132	0.81
Transmembrane Helix	133	155	0.89
Cytoplasmic	156	174	0.86
Transmembrane Helix	175	195	0.89
Non-Cytoplasmic	196	215	0.79
Transmembrane Helix	216	239	0.85
Cytoplasmic	240	283	0.72
Transmembrane Helix	284	305	0.91
Non-Cytoplasmic	306	339	0.56
Transmembrane Helix	340	364	0.81
Cytoplasmic	365	369	0.44
Transmembrane Helix	370	387	0.60
Non-Cytoplasmic	388	392	0.61
Transmembrane Helix	393	414	0.84
Cytoplasmic	415	434	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKFIAFMEK YMVPIAGKIG SQRHLAAIRD GFIAVMPLIL VGSMAVLVNG LPIPAFQNFM  60
   61 KDVFGETWTQ IGAGMWTGSF GVLALMVAVT TSYNLAKSYG VDGLSAGIIS FGALVILTPT 120
  121 TPKEGGLNLA WTGAQGLFVS LIVAILVTEV FRFFVQRNIT IKMPDGVPPA VMKSFAALVP 180
  181 AFVILTGIAS IQLAVKLAGT SVHEYIFNTL QVPLQGLAGT LPSAIFIALL VHVLWFFGLH 240
  241 GPNIVGGIIE PLYLPALEKN IKLFQDGTSA FDVPNIVTKP FFDTFVYLGG SGATLAFLVV 300
  301 VLIVAKSAQL RGVSRLSIGP GAFNINEPVI FGTPIVLNPI LFIPFVLTPV VLVITSYTAI 360
  361 YLGWVPKTVA MVPWNVPPII SGYLVTGLHP SGAILQLFNF VVAMAIYFPF VVACDRSVIR 420
  421 TEKAAQGNNN SVPM