YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49332802, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.52
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKKIFLWVL SILGLLLLIG GIYVYRVYSN VSSTLDSVHQ PLKRDKSEKR DQKINLTDQK  60
   61 PISILLMGVD QRGEETGRSD SLMLFTLNPK TKSMKITSIP RDSYTEIIGK GKKDKINHAY 120
  121 AFGGIDMAVK TVENFLDIPV DHYIEVNMEG FKDIVDAVGG VEVNNDLEFT SVGTHFEKGN 180
  181 LHLDGEKALK YSRMRYEDPR GDFGRQMRQR QVIQAVIKKG ASVSSLASYG DVLKAIEKNV 240
  241 KTSLTQEQMF DIQKNYKDCM QNSEEIQIPG DGHKAADGIW YYYVPDAAKQ DITNKLRAHL 300
  301 EVTK

Type	Start	End	Confidence
Cytoplasmic	1	5	0.48
Transmembrane Helix	6	25	0.50
Non-Cytoplasmic	26	304	0.99