YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|221140734
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.92
Transmembrane Helix	15	36	0.91
Non-Cytoplasmic	37	73	0.60
Transmembrane Helix	74	100	0.86
Cytoplasmic	101	125	0.41
Transmembrane Helix	126	150	0.84
Non-Cytoplasmic	151	169	0.42
Transmembrane Helix	170	193	0.87
Cytoplasmic	194	201	0.39
Transmembrane Helix	202	233	0.65
Non-Cytoplasmic	234	274	0.57
Transmembrane Helix	275	296	0.80
Cytoplasmic	297	302	0.65
Transmembrane Helix	303	321	0.86
Non-Cytoplasmic	322	327	0.51
Transmembrane Helix	328	350	0.81
Cytoplasmic	351	354	0.46
Transmembrane Helix	355	374	0.67
Non-Cytoplasmic	375	380	0.70
Transmembrane Helix	381	402	0.91
Cytoplasmic	403	681	0.88

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKKLFGQLQ RIGKALMLPV AILPAAGLLL AIGTAMQGEA LQHYLPFIQN GGVQTVAKLM  60
   61 TGAGGIIFDN LPMIFALGVA IGLAGGDGVA AIAAFVGYII MNKTMGDFLQ VTPKNIGDPA 120
  121 SGYASILGIP TLQTGVFGGI IIGALAAWCY NKFYNINLPS YLGFFAGKRF VPIMMATTSF 180
  181 ILAFPMALIW PTIQTGLNAF STGLLDSNTG VAVFLFGFIK RLLIPFGLHH IFHAPFWFEF 240
  241 GSWKNAAGEI IHGDQRIFIE QIREGAHLTA GKFMQGEFPV MMFGLPAAAL AIYHTAKPEN 300
  301 KKVVAGLMGS AALTSFLTGI TEPLEFSFLF VAPLLFFIHA VLDGLSFLTL YLLDLHLGYT 360
  361 FSGGFIDYFL LGILPNKTQW WLVIPVGLVY AVIYYFVFRF LIVKLKYKTP GREDKQSQAA 420
  421 TASATELPYA VLEAMGGKAN IKHLDACITR LRVEVNDKSK VDVPGLKDLG ASGVLEVGNN 480
  481 MQAIFGPKSD QIKHEMQQIM NGQVVENPTT MEDDKDETVV VAEDKSATSE LSHIVHAPLT 540
  541 GEVTPLSEVP DQVFSEKMMG DGIAIKPSQG EVRAPFNGKV QMIFPTKHAI GLVSDSGLEL 600
  601 LIHIGLDTVK LNGEGFTLHV EEGQEVKQGD LLINFDLDYI RNHAKSDITP IIVTQGNITN 660
  661 LDFKQGEHGN ISFGDQLFEA K