YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85080149
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	238	0.99
Transmembrane Helix	239	257	0.93
Non-Cytoplasmic	258	280	0.87
Transmembrane Helix	281	302	0.92
Cytoplasmic	303	312	0.85
Transmembrane Helix	313	332	0.93
Non-Cytoplasmic	333	338	0.79
Transmembrane Helix	339	358	0.92
Cytoplasmic	359	370	0.82
Transmembrane Helix	371	392	0.82
Non-Cytoplasmic	393	403	0.75
Transmembrane Helix	404	424	0.91
Cytoplasmic	425	489	0.97
Transmembrane Helix	490	512	0.89
Non-Cytoplasmic	513	525	0.79
Transmembrane Helix	526	547	0.88
Cytoplasmic	548	555	0.86
Transmembrane Helix	556	577	0.94
Non-Cytoplasmic	578	584	0.79
Transmembrane Helix	585	608	0.84
Cytoplasmic	609	650	0.65
Transmembrane Helix	651	672	0.90
Non-Cytoplasmic	673	807	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGGSWRALG CRRYLLYLPK IPGPGRAVVN TSTSTSRCGR GLLQNSSISS KIPPPQPTPI  60
   61 ANHLPSNIPL RTLSAHAAAR DDPSTHSHGN RKQGSSSFLA PHPAERLRYS EDGDGDDSND 120
  121 YGSSESSWID TGDIAEQLDH EDPLRQRLYD TLEDDTLVGV VHHRHPKRHR HSGKHVHYHE 180
  181 SVSSSSAHSS RPSGQAGVVD KEAIRIPDAA PRTVSRAERL IASIMAGTRN PIHGLTGKPL 240
  241 IYFTSIFVSL GVFLFGYDQG VMSGIITGPY FKDYFNQPTS AQIGTMVAIL EIGALISSLL 300
  301 VGRIGDIIGR RKTILYGSCI FFVGGALQTM ATDMAMMMTG RIIAGLGVGM LSTIVPVYQS 360
  361 EISPPHNRGK LACIEFSGNI IGYTTSVWVD YFCGFLEGNI SWRLPLLMQC IMGALLGLGS 420
  421 LIIVESPRWL LDNDHDEEGI VVIANLYGGG DIHNPRARDE FREIKMGVLL ARQEGERTYS 480
  481 EMFKRYSRRV FIAMSAQALA QLNGINVISY YAPLVFESAG WVGHDAVLMT GFNGITYLLS 540
  541 TIPPWYIVDR WGRRHILLTG AVAMVLSLSA ISYFLYLDTH WTPSAVVVMV MIYNAAFGYS 600
  601 WGPIPWLYPP EILPLKIRSK GASLSTATNW AFNFLVGEMT PILQELIHWR LYLIHAFFCA 660
  661 VSFVIGEYLL TATPQGIQLT EFPVYFLYPE TCGVRLEDMD ALFGDSTNAF GTPTVSTPSL 720
  721 HAEVDPLVGP GSPVPRLDIR GRPLASAAIP GLPIDPPDEV EIINKSSSNQ NRGGIGGLLS 780
  781 RLVGRRGRGS AEGSDSGSYA PLRQGDD