YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49244605, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYTFSNDLG TLFTIILAIG FIINLVLAFI IIFLERNRRT ASSTWAWLFV LFVLPLIGFI  60
   61 LYLFFGRTVS ARKLNKNNGK VLTDFDGLLK QQIESFDKGN YGTDNKQVQK HHDLVRMLLM 120
  121 DQDGFLTENN KVDHFIDGND LYDQVLQDIK NAKEYIHLEY YTFALDGLGQ RILKALEEKL 180
  181 KQGLEVKILY DDVGSKKVKM ANFDHFKSLG GEVEAFFASK LPLLNFRMNN RNHRKIIVID 240
  241 GQLGYVGGFN IGDEYLGLGK LGYWRDTHLR IQGDAVDALQ LRFILDWNSQ AHRPQFEYDV 300
  301 KYFPKKNGPL GNSPIQIAAS GPASDWHQIE YGYTKMIMSA KKSVYLQSPY FIPDNSYINA 360
  361 IKIAAKSGVD VHLMIPCKPD HPLVYWATYS NASDLLSSGV KIYTYENGFI HSKMCLIDDE 420
  421 MVSVGTANMD FRSFELNFEV NAFVYDEKLA KDLRVAYEHD ITKSKQLTKE SYANRPLSVK 480
  481 FKESLAKLVS PIL

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.84
Transmembrane Helix	12	34	0.94
Cytoplasmic	35	43	0.85
Transmembrane Helix	44	65	0.95
Non-Cytoplasmic	66	493	0.91