YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28923566, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSDSFRFV NLAVAVLMIL GGVSQFFPLG IQPIILGCYT ILFGVATGLL EFQIPHQVYR  60
   61 YASFMFSFLG RGVFYIFVGC IIPHGHWATI IIGSIIFLVG VAYVALEFVP SIEPPPNMRE 120
  121 VDAGWGAEQV

Type	Start	End	Confidence
Cytoplasmic	1	6	0.92
Transmembrane Helix	7	27	0.88
Non-Cytoplasmic	28	32	0.63
Transmembrane Helix	33	52	0.88
Cytoplasmic	53	60	0.69
Transmembrane Helix	61	82	0.85
Non-Cytoplasmic	83	86	0.62
Transmembrane Helix	87	109	0.88
Cytoplasmic	110	130	0.84