YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28925624, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASNCLRCL VRPSAVALVP RQMLQVGGGS LTFTATAATK GASSANTGGR QNANRPQKLR  60
   61 FKKTKKKNVV SSGKPPLPGE RKAYRKKIVL SNNNALPVPG LETLRPNDLA KQDNVGSVKA 120
  121 LPEDVVDALR AMEAFKPTQC WGIFRQPSVL IRQETVDLTK KMKAAGADGK TIRMVIEGNR 180
  181 VTGKSLLLLQ AMTHAFMNDW VVLHIPEAQE LTTAVTEYAP IENSPLWTQP TYTLKLLQSF 240
  241 KRANEKVLSR MNTVYSHADL PQIIPVNSPL LQLINSAKEA DGAWTVFQAL WRELNAENVP 300
  301 GRPPILFSLD GLAHIMKVSD YRNPAFELIH SHDLALVKLF TDCLSGATVM PNGGAVLGAT 360
  361 TRGNSPRSAS MELAIAQREA EKAGEKEVPQ RDPYSKKYDD RVEAVMKSVE ILRLKGVSKT 420
  421 EARGLLEYWA ASGMLKKRVD ESMVSEKWTL SGNGVVGEME RASLLTMKA

Type	Start	End	Confidence
Signal Peptide	1	17	0.53
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	469	0.97