YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49610971, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	380	0.99
Transmembrane Helix	381	402	0.91
Cytoplasmic	403	415	0.84
Transmembrane Helix	416	436	0.92
Non-Cytoplasmic	437	443	0.90
Transmembrane Helix	444	465	0.92
Cytoplasmic	466	480	0.94
Transmembrane Helix	481	502	0.89
Non-Cytoplasmic	503	522	0.92
Transmembrane Helix	523	546	0.91
Cytoplasmic	547	557	0.80
Transmembrane Helix	558	577	0.92
Non-Cytoplasmic	578	608	0.88
Transmembrane Helix	609	627	0.95
Cytoplasmic	628	634	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIWQKTLLL LCWLFSCSMA VAATDYASFI QDIETRLDKT AQLYEQQKPD DARTEVQMAY  60
   61 FEVFENLEGP IRINISAQKS YQLEATFGEI RRMIGEGKPQ ADVQAKISWL KGELDAVLPV 120
  121 LSEGHKLVAQ EQHGAYDNAE IAPYWQQSFK VIDDQLALAV TEYQAGDYKK SSQSVQQAHY 180
  181 QGFKNSEMEM SVRQNRSAQQ AASINQQFST LITLASQPDQ LTDVAYRVTM LLQDIEDVLP 240
  241 GLPTTRDSQQ ATATPAANAD TGGVPDANWA KVSDDINQAI AAAIAQYRAG QIKPAIMAVQ 300
  301 DTYFDLFEAT GMENKVGSRD AAFKSTLEGY FTRLVSMMNA KQPVDQLQGQ ADALQQELAK 360
  361 AVTMLGDGGE THWSLLIYSL MIIVREGLEA LLIVAAIVAY LVKNNQQDKL PLIRQSVYVA 420
  421 LLCSVITAFI FQLVFTNSGA SRELLEGITM LIAVVMLFFM SYWLLSKVEA RHWKAYLEGK 480
  481 LSHSLSSGSM IGLWLTSFLA VYREGAETVL FYYALVGDAN NMAGHLSILA GFAIGCVILL 540
  541 IAYFVMRYTI VKLPLKPFFM FTGCFMYLMA FVFAGKGVLE LIEGKLFEPT LLTSVPEISW 600
  601 LGIYPYVETL IPQVVLVVAA LLALWVMRRR ASAI