YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50120481, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.90
Transmembrane Helix	32	53	0.74
Non-Cytoplasmic	54	65	0.72
Transmembrane Helix	66	89	0.87
Cytoplasmic	90	98	0.90
Transmembrane Helix	99	120	0.92
Non-Cytoplasmic	121	130	0.74
Transmembrane Helix	131	154	0.81
Cytoplasmic	155	167	0.83
Transmembrane Helix	168	191	0.90
Non-Cytoplasmic	192	199	0.87
Transmembrane Helix	200	221	0.89
Cytoplasmic	222	258	0.98
Transmembrane Helix	259	280	0.93
Non-Cytoplasmic	281	297	0.91
Transmembrane Helix	298	318	0.93
Cytoplasmic	319	327	0.83
Transmembrane Helix	328	347	0.95
Non-Cytoplasmic	348	351	0.86
Transmembrane Helix	352	377	0.84
Cytoplasmic	378	388	0.79
Transmembrane Helix	389	411	0.89
Non-Cytoplasmic	412	419	0.82
Transmembrane Helix	420	439	0.93
Cytoplasmic	440	500	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLRKKKIEP MKIQDITIID NARLKKAITA AALGNAMEWF DFGVYGFVAY ALGQVFFPGA  60
   61 DPGVQMIAAL ATFSVPFLVR PLGGIFFGAM GDKFGRQKVL SITIIIMSVS TFCIGLIPSY 120
  121 ESIGIWAPVL LLLAKLAQGF SVGGEYTGAA IFVAEYSPDR RRGFLGSWLD FGSIAGFVMG 180
  181 AGVVVVISSI VGEESFLEWG WRIPFFIAAP LGLIGIYLRH ALEETPTFQQ HVDNIDKESK 240
  241 DSIQSPPKIS LREIVTKQWR GLLVCIGMVI TTNVTYYMLL TYMPSYLSHS LNYSEDHGVM 300
  301 IIIAVMIGML FVQPVMGLMS DRYGRKPFVI CGSIGLLLLS VPSFILINSD VIGLIFCGLL 360
  361 MLAVLLNSFT GVMASTLPAL FPTHIRYSAL ATSFNVSVLV AGFTPTAVAW LVESTGNLYM 420
  421 PAYYLMVIGL IGLITGMSMR ETANQPLKGA TPAASDRTEA KELLQEQYDN IEQKIEDIDE 480
  481 QIAELEKKRK RLSEQHPEIN