YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|49611156, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDSDLEKT EAPTPQKEEK AREEGQIPRS RELTSVLMMV AGLAILWIGG DVMAGRLARI  60
   61 VSQSLNFDYA TIGDDTQMLR HVGSLLRQAV SALVPIMLGA VLVALSAPML LGGILFSTKS 120
  121 LKVDFKKLDP ISGLKRLFSS QALAELFKAI LKSVIVGIIS TLFLIHNWPK ILHLVSEAPI 180
  181 AALGDALELA VMCGFLIIIG LIPMVAFDVF WQVWSHIKKL RMTKQEIRDE HKQSEGDPHV 240
  241 KGRIRQQQRA MAQRRMMADV PKADVIVTNP THYAVALRYD DKKMNAPKVL AKGAGDIALR 300
  301 IRELGTEHRV PILEAPPLAR ALFRHSEVGQ HIPAALYAAV AEVLAWVYQL KRWKREGGLI 360
  361 PRKPKHLPVP DALDFAKENT TDG

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	55	0.84
Non-Cytoplasmic	56	91	0.92
Transmembrane Helix	92	116	0.88
Cytoplasmic	117	148	0.89
Transmembrane Helix	149	168	0.90
Non-Cytoplasmic	169	188	0.88
Transmembrane Helix	189	211	0.92
Cytoplasmic	212	383	0.92