YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLSA_PECAS
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFYTVISW LLVFSYWLLI AGVTLRILMK RRAVPSAMAW LLVIYILPLV GIVAYLSFGE  60
   61 LHLGKRRAER ASKMWPSTAK WLRELKEYRR IFATENSEVA SALFQLCERR QGVGGVKGNQ 120
  121 LQLMTTFDDT IKALLRDIEL ARNNIEMVFY IWQPGGLVEQ VTSSLISAAR RGVHCRILLD 180
  181 SAGSVQFFRQ HHPELMRTAG IEVVEALKVN LFRAFLRRMD LRQHRKIILI DSRIAYTGSM 240
  241 NMVDPRLFKQ DAGVGQWIDL MARIEGPVAT TLGIIYCCDW EMETGKRLLP PPPDVNVMPF 300
  301 EQESGHTIQV IASGPGYPEE MIHQALLTSV YSARKQLIMT TPYFVPSDDL LHAICTAAQR 360
  361 GVDVSIIVPH KNDSVLVGWA SRAFFTELLA AGVKIYQFKD GLLHTKSVLV DGQLSLVGTV 420
  421 NLDMRSLWLN FEITLVIDDA GFGSDLACVQ EDYIARSRLL NATQWQNRPY WQRIVERLFY 480
  481 FFSPLL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.90
Transmembrane Helix	7	28	0.94
Cytoplasmic	29	36	0.87
Transmembrane Helix	37	59	0.90
Non-Cytoplasmic	60	486	0.96