YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50121360, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHEIFEMLLA VFDRAALMLI CLFFLTRTRQ FRQLLQKEQH SPRERVMVTA IFSLFALFGT  60
   61 YSGINVEGSL VNVRVIAVMS GGILFGPWVG IATGIIAGAH RYLIDIDGIT SVPCLITSII 120
  121 AGITSGYINK KVKKEQQWSI GILGGMLCES LTMLLVVAWA TPIELGLDIV SKIAVPMILG 180
  181 SICIGLIVLL VQSVANEKEV IAARQAKLAL DIAHKTLPYF RNINSDSLTA ICRIIRTEIN 240
  241 ADAVAITNTQ HIQAYVGIGE DKYNIGHDII SPMTQQAIHD GKIIIKNNDE QHLTPEIHSM 300
  301 IVIPLWEHGQ VTGTLKIYYR HAHKITYSLR VMAVGLSQIM STQIEVSRTE QLRDMANKAE 360
  361 LRALQSKINP HFLFNALNAI SSSIRINPDT ARQLVINLSR YLRYNLELND DALIDIKKEL 420
  421 YQIQDYIAIE QARFGAKLTV IYDIDDDVAY KIPSLLIQPL VENAIVHGIQ PFKGKGTVVL 480
  481 SVKEQGDKLL VAVKDTGHGI SQETIDRVAR NELPGNKIGL LNVHHRVRLL YGDGLHIRRL 540
  541 EPGTEIYFYI PREDKTPSAL PDTVQVPSSR YSAEKTGGNP

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.73
Transmembrane Helix	7	26	0.90
Cytoplasmic	27	45	0.72
Transmembrane Helix	46	64	0.93
Non-Cytoplasmic	65	74	0.59
Transmembrane Helix	75	97	0.87
Cytoplasmic	98	107	0.55
Transmembrane Helix	108	128	0.78
Non-Cytoplasmic	129	137	0.55
Transmembrane Helix	138	161	0.90
Cytoplasmic	162	168	0.53
Transmembrane Helix	169	195	0.80
Non-Cytoplasmic	196	580	0.69