YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIDC_PECAS
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQRNLLLI ALLFVTFMLW QAWETDKNPP ATTQTIQQAT NAVTGDATNQ GVPASGQGKL  60
   61 ITVKTDVLSL TINTRGGDVE QAHLLAYPDI LGSDKPFHLL ETTSAFVYQA QSGLTGKNGP 120
  121 DNPANGSRPL FVTTQDSFEL ADGQSELRIP MTYTAADGVT YTKTFVLKRG DYALNVDYSV 180
  181 NNTSAQPLEL TLFGQLKQSI DLPKHRDTGS NNFALHTYRG AAFSSSEDKY KKYSFSDMDE 240
  241 GLNITTNSGW VAMLQQYFAT AWIPTTAGAN TFYTSKLGNG QAAIGFKAAP VIIAAGSQQN 300
  301 LNATLWVGPE IQDKMAAVAP HLDLTVDYGW LWFISQPLFK LLKFLHGFIG NWGFSIIAIT 360
  361 FIVRGVMYPL TKAQYTSMAK MRLLQPKLQA MRERIGDDKQ RMSQEMMALY KSEKVNPLGG 420
  421 CLPLVIQMPI FLALYYMLMG SVELRHAPFA LWIHDLSAQD PYYILPILMG VTMFFIQKMS 480
  481 PTTVTDPMQQ KIMTYMPVIF TVFFLWFPSG LVMYYIVSNL VTILQQQLIY RGLEKRGLHS 540
  541 REKK

Type	Start	End	Confidence
Signal Peptide	1	22	0.96
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	343	0.99
Transmembrane Helix	344	368	0.86
Cytoplasmic	369	415	0.97
Transmembrane Helix	416	439	0.87
Non-Cytoplasmic	440	460	0.89
Transmembrane Helix	461	477	0.94
Cytoplasmic	478	494	0.80
Transmembrane Helix	495	517	0.90
Non-Cytoplasmic	518	544	0.90