YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85090209
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.98
Transmembrane Helix	21	44	0.91
Cytoplasmic	45	62	0.94
Transmembrane Helix	63	83	0.90
Non-Cytoplasmic	84	97	0.86
Transmembrane Helix	98	117	0.94
Cytoplasmic	118	139	0.89
Transmembrane Helix	140	162	0.91
Non-Cytoplasmic	163	173	0.72
Transmembrane Helix	174	194	0.92
Cytoplasmic	195	203	0.79
Transmembrane Helix	204	224	0.93
Non-Cytoplasmic	225	262	0.94
Transmembrane Helix	263	285	0.80
Cytoplasmic	286	295	0.72
Transmembrane Helix	296	315	0.86
Non-Cytoplasmic	316	360	0.72
Transmembrane Helix	361	389	0.70
Cytoplasmic	390	406	0.90
Transmembrane Helix	407	430	0.89
Non-Cytoplasmic	431	436	0.76
Transmembrane Helix	437	459	0.91
Cytoplasmic	460	464	0.88
Transmembrane Helix	465	486	0.91
Non-Cytoplasmic	487	504	0.96
Transmembrane Helix	505	527	0.90
Cytoplasmic	528	584	0.96
Transmembrane Helix	585	605	0.90
Non-Cytoplasmic	606	613	0.82
Transmembrane Helix	614	637	0.91
Cytoplasmic	638	704	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGGADTTVK IETATALNQG VGYGIVIGLG ALFALGMIFV TFILKRYNRE LQTSEMFNTA  60
   61 GRTVKSGLVG SAVVSSWTWA ATLLQSSGVC YRYGVSGPLW YASGATVQIL LFATLAIELK 120
  121 RRAPNAHTYL EVIRARFGTL PHIVFMIFGL MTNILVSLML IVGGSATINA LTGMHTIAAI 180
  181 YLLPVGVVAY TLVGGLKATI LTDWIHTFIL LIIIIVFALS AYASSEVLGS PSAVYDLLVK 240
  241 AAAAHPVDGN HEGSYLTMRS REGAIFFVIN IVGNFGTVFL DNGYYNKAIA ASPVHALPGY 300
  301 ILGGLCWFAI PWLTATTMGL SGLALESSPR FPTYPNRMPE ADVSAGLVLP YAAVALLGKG 360
  361 GAAATLLIVF MAVTSATSSQ LIAVSSIIVY DLYRTYIKPE ASGKRLIYMS HVIVCAYALF 420
  421 IASFSVGLWY AGISMGYLYV MMGVIISSAV LPAALVLTWS GLNKWAAALS PVLGLCVALV 480
  481 AWLVTAKKEC GEMSVACTGS NMPMLAGNVA ALLSPVVFVP VLTLVFGKAK YDWKSMMAIS 540
  541 RGDDHDVAGE AGVDLEEVPG GREESEREME EEQKKLRRAS KISKTMTAVL TLALLILWPM 600
  601 PLYGTGYIFS KPFFTGWVVV GIIWIFLSFI GVGLFPIYEG RETLIRTCKY IWWDITGKGV 660
  661 KAIHADQAKH AGEVVVTEGK TPGDQTPEEK SVKGEKVREG IDSS