YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|85115136
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKWRFTKL DAFTKTVEDA RIRTTSGGIV TIVSLLVVLF LSWGEWRDYR KVVIHPELVV  60
   61 DKGRGERMEI HLNITFPKVP CELLTLDVMD VSGEQQHGVQ HGVKKIRLRP QSEGGGEIDA 120
  121 KVLSLHAADE SATHLDPSYC GPCYGAPAPY NAKKPGCCST CEEVREAYAQ ASWAFGDGAT 180
  181 MEQCQREHYT ERLAEQRHEG CRIEGGLRVN KVIGNFHIAP GRSFSNGNMH VHDLAQWWST 240
  241 PVPGGHSFSH IIHSLRFGPQ LPDDLVRKLG GNGKNTLWTN HHLNPLDNTK QETNDPNYNF 300
  301 MYFVKIVPTS YLPLGWEKQA AQNKAAWEQD HSVGLGAYGY GSDGSMETHQ YSVTSHKRSL 360
  361 TGGDDSKEGH GERLHSRGGI PGVFFSYDIS PMKVVNREER AKSFLGFLAG LCAVVGGTLT 420
  421 VAAAVDRGLF EGTVRLKKLR SKDN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.71
Transmembrane Helix	21	43	0.79
Non-Cytoplasmic	44	404	0.81
Transmembrane Helix	405	430	0.77
Cytoplasmic	431	444	0.70