YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13235454
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADTNINDR LEIVMQDHFS ILSLIGSSDF IGKSVMLMLL IASIWSWSII LHKIFSLAQV  60
   61 QRRIQSFENV FWSGCVLEQL YESIKKSVNN PLALIFVSAM DECNSLNTKG FSEALKNNHK 120
  121 ERIMSAMYLA QNREIEKLEK YLNVLATVGS SAPFVGLFGT VWGIMHSFQS IALSKNTSLA 180
  181 VVAPGIAEAL LATAIGLFVA IPAVIFYNYL MSRITLINNK IEDFISELNS ILSKAIDQEK 240
  241 M

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.89
Transmembrane Helix	30	55	0.79
Cytoplasmic	56	140	0.98
Transmembrane Helix	141	164	0.90
Non-Cytoplasmic	165	188	0.84
Transmembrane Helix	189	210	0.92
Cytoplasmic	211	241	0.98