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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|85111343
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPFSRRSD ARGQSLSPIS VLLTLSSVAL SPVTAISFTP APATNLDLKD LGRVALAGDF  60
   61 SGISLFQFEE QNEQPFTTNG SQSLMARMPN GIFSPVVTTD ATILAMCTFV EGNGKEDGVI 120
  121 IGGNFTSLQL PTHGSGSPDI RESKAIALFN PNTSSIETLS GLEGQVYAVL CDRDTNSVYV 180
  181 GGNFVGKDSR NAIAWVGGQG WTDLPFRGFN GPVNSITKAS NGHIIYGGSF TGLGNATAPT 240
  241 ERDGQVINLS SANISASPST TRDGFSDPKN IVCSTSGTDG AGKTWLLQDN SPGFWQAKFR 300
  301 HGFRPTKLRL YNTHLDGAGT KTWRFTALPI NGIMNMTYVD PVTNKNATCT SECPLSNNQT 360
  361 IKFQDFHFIN VIGMNEFRID ISDYYGNGGG LNGIELFGDD IFSYAINDFN EPTCANLEFK 420
  421 SSSTATGPWQ VTPSHQSTSE YLTAQISPPV TDTSAKIVFS PDIRESGFYS VNLYTPGCLQ 480
  481 DDTCSSRGQV HLSGQMTADP TKSEPVDQTL FQTNNFDKYD QIYNGMVDAS SSSFRPQITL 540
  541 TPVAGQDLAS LTLVAQSIAF TLINSTGGLN GLFEYTPGQH VNVSDFTASA VNRLGSSFSG 600
  601 KSAVNTLATS GDTVFVGGNF TSPSAEHVVA LNTKDSTNRT LDGGLNGEVQ SMILDGNTLY 660
  661 VGGSFNSTSE KPVDGLNNVA AYDTEKNTWS PLGAGVNGKV MRVVGLTMNI TGSTPEFVVS 720
  721 VNGDFDELNA FDKNPAVSVT GFGIWVPSQK NWLQNLDLEL ESIDGVLSTS IIDRSGSGSL 780
  781 YAGSLVSSTL GVRDIAGLGE TLSRLPLKIQ APSKPSSSNS LAKRDSSINA DSADSLQGVV 840
  841 TGIFDQENKR NLTILGGHFT ATGSEPAINN LLIMDGKKNN EISGLGDGIS QDSTVMALVV 900
  901 HNDILFAGGN ITGTVNGNEV KALVTYNLAS MSFSSQPPSL NGGDGTVSSI AVRDGTDDVY 960
  961 VGGSFTQAGS LDCPGVCFFS TSSSQWQQAG QNLGGTVNTL LWVDENLLLA GGNLTINNTA1020
 1021 SAYLATYDPK TLVWDAYPDA GQLPGPVEVL TAGTSDNKQI WVSGTASNGS VYLMKSEKDD1080
 1081 GSSWHSVGQT LQPGTKIRGL QIFQLSQSHD KHSLIDDKEV LMVTGHIVLP DFGSASGVLF1140
 1141 DGANFRPYIL TTNSGNTPGS LAVVFSEKQN FFGKDGKHLP LVFVVLIGLG ISLALMLLIV1200
 1201 VAGLILDRIR KKREGYVPAP THMYDRGSGI QRIPPHELLE GLSKSRSGAP QM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle