YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13474395, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.70
Transmembrane Helix	30	44	0.68
Cytoplasmic	45	84	0.80
Transmembrane Helix	85	105	0.72
Non-Cytoplasmic	106	113	0.70
Transmembrane Helix	114	135	0.87
Cytoplasmic	136	152	0.91
Transmembrane Helix	153	176	0.93
Non-Cytoplasmic	177	183	0.83
Transmembrane Helix	184	207	0.88
Cytoplasmic	208	216	0.83
Transmembrane Helix	217	237	0.94
Non-Cytoplasmic	238	242	0.82
Transmembrane Helix	243	263	0.94
Cytoplasmic	264	356	0.57
Transmembrane Helix	357	378	0.85
Non-Cytoplasmic	379	392	0.62
Transmembrane Helix	393	416	0.80
Cytoplasmic	417	426	0.69
Transmembrane Helix	427	446	0.86
Non-Cytoplasmic	447	452	0.50
Transmembrane Helix	453	472	0.74
Cytoplasmic	473	482	0.76
Transmembrane Helix	483	504	0.91
Non-Cytoplasmic	505	512	0.76
Transmembrane Helix	513	536	0.91
Cytoplasmic	537	561	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTRPLFDPT QRDASTALAA SQHFWRGNGH FLLHCKIIAV VWGWRRSWIF RVRKSAQKSG  60
   61 ILNLEANPFD PPEGSLRKSV GRGAVVTAMS QSVRVATQII SVIVLSRLLS PQDFGVVAMC 120
  121 APVLAFIALF QDFGLTQATI QKSGIRHEEV NYLFWINVAV SAILACVLAG AAPLVAAFYG 180
  181 EPRVAGLVAA FGLQIMAYGL GAQHLALLTR RMQFGRLAIV DVASAVAGLA VSIAWTFIDR 240
  241 SYWALFAGTL TGAVLPTLCY WASSRWRPSL PRKVAGIGEL INFGAGITGF NFANFFARNL 300
  301 DNVLIGKYWG EQQLGLYDRA YKLLLFPLSQ ITNPLSKVMV PALSRLKDEP DRYRSAYLRV 360
  361 MPLILLVALP GVAFATAMSD VLIPFVLGEQ WRASASIFLA LGFAGLLQPL NNPAGWLFVS 420
  421 QGRSGDFMRW GIITAVTSVL AFALGLPYGA LGVAIAYAIS EYLRTPFLWL YVGKSGPLRA 480
  481 SHVLRAATPF VLGAHLALAA VWLIKPMLPQ QHVIALASGA ILAYLITSVV ALTFASGREA 540
  541 LREALKMLPA RQPAATPREA Q