YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|14027563, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.90
Transmembrane Helix	14	34	0.91
Non-Cytoplasmic	35	53	0.87
Transmembrane Helix	54	74	0.94
Cytoplasmic	75	81	0.94
Transmembrane Helix	82	103	0.94
Non-Cytoplasmic	104	108	0.84
Transmembrane Helix	109	129	0.92
Cytoplasmic	130	139	0.87
Transmembrane Helix	140	162	0.91
Non-Cytoplasmic	163	169	0.87
Transmembrane Helix	170	190	0.94
Cytoplasmic	191	199	0.76
Transmembrane Helix	200	219	0.94
Non-Cytoplasmic	220	232	0.83
Transmembrane Helix	233	253	0.89
Cytoplasmic	254	268	0.84
Transmembrane Helix	269	290	0.91
Non-Cytoplasmic	291	299	0.72
Transmembrane Helix	300	323	0.83
Cytoplasmic	324	331	0.84
Transmembrane Helix	332	352	0.90
Non-Cytoplasmic	353	365	0.75
Transmembrane Helix	366	388	0.87
Cytoplasmic	389	399	0.89
Transmembrane Helix	400	420	0.87
Non-Cytoplasmic	421	472	0.61
Transmembrane Helix	473	493	0.85
Cytoplasmic	494	511	0.48

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMQEPFREV PHRGLITVAL MLATVMQALD TTIANVALPT MTGDLGASPD NINWVLTSYI  60
   61 VAAAIMTPVT GWLADRFGRK ELFLTAVVGF TIFSMLCGLA WSLETIVLFR LMQGVFGAAI 120
  121 VPLSQTFLLD INPKERHGQA MAIWGAGIML GPILGPTLGG WLTENFNWRW VFFINLPVGI 180
  181 VAFLGMAAYL PAVARRVRSF DFFGFAMISL GVGALQLMLD RGGEVDWFSS VEIWIELGLA 240
  241 ITGFWVFIIH TMTADHPFID PKIFLDQNFV TGLAFIFVMG VLILASMSLL PPMLSTIFGY 300
  301 PTITIGMVIG PRGIGTMISM LVVGRIMGKI DARILVVIGF LLTAHSLYTM ASFTPQMDNW 360
  361 LIISSGVIQG LGMGMVFVPL STVAFATLDA RYRTDATALF SLVRNLGSSI GVSVVTVLLV 420
  421 RNTQINHAEL SAFINPFNPN LWAVSPAAAG GDPMALSMVD RMVNLQAMMI SYVNDFKILM 480
  481 VMTLAAIPFV FLLRKPKAAP AGGGAPAAHM D