YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28922331, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLPKGGVSW KAARAQLPPA RALWAILTKT RFLLLVAVTG VVLLLWRGIS TGASEMQSFY  60
   61 CWGPSKPPME MTLNEQQAWN AHLHTPVIFN HHAPLEINSS TISHVDLNPV KSTTKAVANE 120
  121 ERILILTPLK DASRYLSKYF ELIAELTYPH HLIDLAFLVS DSTDDTLAVL ASELDRIQKR 180
  181 PDQIPFHSAM VVEKDFDFKL SQNVEERHSF AAQGPRRKAM GRARNYLLSA ALKPEHSWVY 240
  241 WRDVDIVDSP KKILEDFIAH DKDILVPNIW FHRYQNGRDI EGRFDYNSWV ESDKGRRLAS 300
  301 SLDKDVVLAE GYKEYDTGRT YMARMGDWRD DKDVEIELDG IGGVNILVKA DVHRSGINFP 360
  361 CYAFENQAET EGFAKMAKRA GYQVIGLPNY VVWHIDTEEK GGNA

Type	Start	End	Confidence
Signal Peptide	1	52	0.92
N-region	1	43
H-region	44	49
C-region	50	52
Cleavage Site	52	53
Non-Cytoplasmic	53	404	0.99